Chapter 7 Supplementary tables

Table 7.1: Sites of HIV Gag (numbered according to HXB2 reference sequence) used to model networks in the ground-truth tests.
Sites of HIV Gag used in the model
Network 1 161, 163, 164, 225, 243, 257, 261, 263, 265, 363, 364, 365, 366, 367
Network 2 13, 14, 73, 137, 144, 149, 150, 151, 152, 153, 163, 167, 169, 170, 171, 172, 174, 175, 177, 179, 180, 181, 183, 185, 186, 187, 188, 189, 191, 195, 208, 209, 214, 222, 229, 237, 240, 307, 329, 335, 354, 496, 497
Table 7.2: List of sites within each of the inferred sectors.
Sector 1-(PC1) Sector 2-(PC2) Sector 3-(PC3 & PC7) Sector 4-(PC4) Sector 5-(PC5) Sector 6-(PC6 &PC9) Sector 7-(PC8)
1, 2, 3, 4, 5, 6, 9, 13, 14, 16, 19, 20, 21, 23, 27, 31, 35, 36, 38, 39, 40, 155, 156, 160, 420, 421 161, 163, 164, 225, 243, 257, 261, 263, 265, 363, 364, 365, 366, 367 13, 73, 137, 144, 149, 150, 151, 152, 153, 163, 166, 167, 169, 170, 171, 172, 174, 175, 177, 179, 180, 181, 183, 185, 186, 187, 188, 189, 191, 192, 194, 195, 196, 197, 198, 208, 209, 214, 221, 222, 229, 235, 236, 237, 240, 241, 307, 329, 335, 354, 355, 356, 496 335, 353, 354, 355, 356, 433, 434, 435, 437, 438, 439, 440, 442, 443, 444, 445, 446, 447, 448, 449, 450, 457, 458, 459 39, 144, 187, 188, 189, 327, 392, 395, 396, 399, 405, 413, 414, 416, 426 12, 15, 24, 28, 30, 33, 34, 46, 54, 79, 81, 103, 106, 110, 121, 124, 138, 146, 147, 158, 159, 168, 173, 182, 186, 211, 217, 218, 219, 223, 224, 228, 230, 231, 248, 251, 252, 256, 279, 280, 286, 303, 312, 313, 314, 340, 374, 385, 398, 403, 427, 429, 472, 478, 481, 483 20, 23, 163, 255, 281, 299, 300, 301, 323, 324, 336, 349
Note:
Sites within sectors are numbered according to the HXB2 reference sequence.
* PC(s) used to form the sectors are indicated in parentheses.
Table 7.3: Number of fully conserved sites included in each inferred sector.
Sector Number of fully conserved sites (% of the total sites in the sector)
1 2 7.7
2 0 0
3 12 22.6
4 4 16.7
5 1 0.07
6 7 14.3
7 1 0.08
Table 7.4: Cross-serotypically conserved epitopes identified in this study (Fig. 3.6) that are reported as immunodominant in previous studies (Alwis et al., 2016; Weiskopf et al., 2013; Tian et al., 2019).
Epitopes Studies
APTRVVAAEM, DTTPFGQQR (Alwis et al., 2016)
APTRVVAAEM, ELMRRGDLPV, LPAIVREAI, RVIDPRRCL (Weiskopf et al., 2013)
AIVREAIKR, APTRVVAAEM, RVIDPRRCLK, YLPAIVREA, ILAPTRVVAAEMEEA, LAPTRVVAAEME, LPAIVREAI, RVIDPRRCL, IAVSMANIF, MANIFRGSY, DTTPFGQQR, KAKGSRAIW, TPFGQQRVF (Tian et al., 2019)
Table 7.5: Cross-serotypically conserved epitopes identified in this study (Fig. 3.6) against which T cell responses were reported (Weiskopf, Angelo, et al., 2015; Waickman et al., 2019) in naïve individuals following vaccination.
Vaccines Epitopes
Monovalent LAV/Tetravalent LAV (TV003) (Weiskopf, Angelo, et al., 2015) HTWTEQYKF, APTRVVAAEM, DPRRCLKPV, KPGTSGSPI, RVIDPRRCLK, DISEMGANF, IAVSMANIF, MANIFRGSY, KAKGSRAIW, RFLEFEALGF, KVRKDIPQW, TWSIHAHHQW, TPFGQQRVF
Tetravalent LAV (TK-003) (Waickman et al., 2019) AIVREAIKR, APTRVVAAEM, YLPAIVREA, LPAIVREAI, LRTLILAPTRVVAAE, RTLILAPTRVVAAEM, IAVSMANIF, MANIFRGSY, KTWAYHGSY
Table 7.6: List of all SARS-CoV-derived T cell epitopes determined using positive MHC binding assays (with associated MHC allele information available at 4 digit resolution) and found to be identical in SARS-CoV-2.
Protein IEDB ID Epitope MHC Allele MHC Allele Class
E 57395 SEETGTLIV HLA-B45:01/HLA-B40:01 I
M 16972 FLWLLWPVT HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
M 16973 FLWLLWPVTL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06 I
M 16974 FLWLLWPVTLACFVL HLA-DRB1*01:01 II
M 26759 IKDLPKEITVATSRT HLA-DRB1*01:01 II
M 35671 LEQWNLVIGF HLA-B44:02/HLA-B44:03/HLA-B18:01/HLA-B40:01/HLA-B40:02/HLA-B45:01 I
M 35797 LFARTRSMW HLA-A23:01/HLA-A24:02 I
M 40677 LWLLWPVTL HLA-A23:01/HLA-A24:02/HLA-A*29:02 I
M 40685 LWPVTLACF HLA-A23:01/HLA-A24:02/HLA-A*29:02 I
M 43024 MWSFNPETNI HLA-A23:01/HLA-A24:02 I
M 44913 NLVIGFLFL HLA-A02:01/HLA-A02:03/HLA-A02:06/HLA-A02:02/HLA-A*68:02 I
M 48051 PKEITVATSRTLSYY HLA-DRB1*01:01 II
M 5149 ATSRTLSYY HLA-A01:01/HLA-A03:01/HLA-A11:01/HLA-A29:02/HLA-A30:02/HLA-A26:01/HLA-A31:01/HLA-A68:01 I
M 5150 ATSRTLSYYK HLA-A03:01/HLA-A11:01/HLA-A31:01/HLA-A68:01 I
M 52851 QWNLVIGFLF HLA-A23:01/HLA-A24:02/HLA-A*29:02 I
M 56634 RYRIGNYKL HLA-A23:01/HLA-A24:02/HLA-A*30:02 I
M 57544 SELVIGAVI HLA-B40:01/HLA-B40:02/HLA-B44:03/HLA-B45:01/HLA-B18:01/HLA-B44:02 I
M 57856 SFNPETNIL HLA-A23:01/HLA-A24:02/HLA-A*30:02 I
M 59778 SMWSFNPET HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06 I
M 66407 TSRTLSYYK HLA-A03:01/HLA-A11:01/HLA-A31:01/HLA-A33:01/HLA-A*68:01 I
M 66952 TVATSRTLSY HLA-A01:01/HLA-A26:01/HLA-A29:02/HLA-A30:02 I
M 72759 WLLWPVTLA HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
M 72972 WPVTLACFVL HLA-B51:01/HLA-B35:01/HLA-B53:01/HLA-B07:02/HLA-B*54:01 I
N 125100 ILLNKHID HLA-A*02:01 I
N 17385 FPRGQGVPI HLA-B07:02/HLA-B54:01/HLA-B08:01/HLA-B35:01/HLA-B51:01/HLA-A02:01/HLA-B*53:01 I
N 190494 MEVTPSGTWL HLA-B*40:01 I
N 193464 GMEVTPSGTWL HLA-B*40:01 I
N 193498 LLLLDRLNQ HLA-A*02:01 I
N 21347 GMSRIGMEV HLA-A*02:01 I
N 22856 GTTLPKGFY HLA-A30:02/HLA-A29:02/HLA-A*26:01 I
N 2431 ALALLLLDR HLA-A*03:01 I
N 25542 IDAYKTFPPTEPKKD HLA-DRB1*01:01 II
N 27182 ILLNKHIDA HLA-A*02:01 I
N 2802 ALNTPKDHI HLA-A*02:01 I
N 33667 KTFPPTEPK HLA-A11:01/HLA-A03:01/HLA-A31:01/HLA-A68:01 I
N 33668 KTFPPTEPKK HLA-A03:01/HLA-A11:01/HLA-A68:01/HLA-A31:01 I
N 34851 LALLLLDRL HLA-A*02:01 I
N 37473 LLLDRLNQL HLA-A*02:01 I
N 37515 LLLLDRLNQL HLA-A*02:01 I
N 3810 APSASAFFGM HLA-B07:02/HLA-B35:01/HLA-B51:01/HLA-B53:01 I
N 38881 LQLPQGTTL HLA-A*02:01 I
N 3956 AQFAPSASA HLA-A02:02/HLA-A02:06/HLA-A02:01/HLA-A02:03 I
N 39576 LSPRWYFYY HLA-A01:01/HLA-A29:02/HLA-A30:02/HLA-A11:01/HLA-A23:01/HLA-A24:02/HLA-A*31:01 I
N 42648 MSRIGMEVTPSGTWL HLA-DRB1*01:01 II
N 4307 ASAFFGMSR HLA-A31:01/HLA-A11:01/HLA-A68:01/HLA-A03:01 I
N 44501 NKHIDAYKTFPPTEP HLA-DRB1*01:01 II
N 4936 ATEGALNTPK HLA-A11:01/HLA-A03:01/HLA-A68:01/HLA-A31:01 I
N 51482 QLPQGTTLPK HLA-A03:01/HLA-A11:01/HLA-A*68:01 I
N 52114 QQQGQTVTK HLA-A11:01/HLA-A31:01 I
N 52129 QQQQGQTVTK HLA-A*11:01 I
N 56979 SASAFFGMSR HLA-A11:01/HLA-A31:01/HLA-A68:01/HLA-A33:01/HLA-A*03:01 I
N 60242 SPRWYFYYL HLA-B07:02/HLA-B51:01/HLA-B53:01/HLA-B54:01 I
N 60380 SQASSRSSSR HLA-A31:01/HLA-A68:01/HLA-A11:01/HLA-A33:01 I
N 65763 TPSGTWLTY HLA-A29:02/HLA-A11:01 I
N 66706 TTLPKGFYA HLA-A*02:01 I
N 69720 VLQLPQGTTL HLA-A*02:01 I
N 69721 VLQLPQGTTLPKGFY HLA-DRB1*01:01 II
N 71461 VTPSGTWLTY HLA-A30:02/HLA-A01:01/HLA-A26:01/HLA-A29:02 I
N 956 AEGSRGGSQA HLA-B*45:01 I
orf1a 16537 FLCLFLLPSL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 16632 FLGRYMSAL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06 I
orf1a 16737 FLLNKEMYL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06 I
orf1a 16743 FLLPSLATV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 16779 FLNGSCGSV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 16786 FLNRFTTTL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 16820 FLPRVFSAV HLA-A02:02/HLA-A02:06/HLA-A02:01/HLA-A02:03/HLA-A*68:02 I
orf1a 17657 FRYMNSQGL HLA-C*06:02 I
orf1a 18103 FTYASALWEI HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 1946 AIILASFSA HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 23215 GVYDYLVST HLA-A02:06/HLA-A02:01/HLA-A02:02/HLA-A02:03 I
orf1a 26973 ILASFSAST HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 27083 ILGTVSWNL HLA-A02:01/HLA-B58:01 I
orf1a 28199 IQPGQTFSV HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A02:01/HLA-A*68:02 I
orf1a 2855 ALRANSAVK HLA-A03:01/HLA-A31:01/HLA-A*11:01 I
orf1a 2998 ALWEIQQVV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A68:02/HLA-A69:01/HLA-B*15:01 I
orf1a 32240 KLWAQCVQL HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03/HLA-A31:01/HLA-A03:01 I
orf1a 37766 LLSAGIFGA HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 42260 MPASWVMRI HLA-B07:02/HLA-B35:01 I
orf1a 46414 NVLAWLYAA HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 51442 QLMCQPILL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 51443 QLMCQPILLL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 5447 AVLQSGFRK HLA-A03:01/HLA-A11:01 I
orf1a 59312 SLLSVLLSM HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03 I
orf1a 64827 TLGVYDYLV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A68:02/HLA-A*02:03 I
orf1a 67078 TVLSFCAFA HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 69392 VLAWLYAAV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 69758 VLSFCAFAV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1a 74209 YIFFASFYY HLA-A03:01/HLA-A11:01/HLA-A68:01/HLA-A26:01/HLA-A31:01/HLA-A33:01/HLA-A69:01/HLA-B15:01/HLA-B*58:01 I
orf1b 17354 FPPTSFGPL HLA-B07:02/HLA-A69:01/HLA-B51:01/HLA-C14:02/HLA-A11:01/HLA-B15:42/HLA-B35:01/HLA-B45:06/HLA-B54:01/HLA-C04:01 I
orf1b 18133 FVDGVPFVV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03/HLA-A*68:02 I
orf1b 2027 AIMTRCLAV HLA-A02:01/HLA-A02:03/HLA-A02:06/HLA-A02:02/HLA-A*68:02 I
orf1b 22916 GVAMPNLYK HLA-A03:01/HLA-A11:01/HLA-A68:01/HLA-A31:01 I
orf1b 2682 ALLADKFPV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03 I
orf1b 27078 ILGLPTQTV HLA-A02:01/HLA-B15:01 I
orf1b 27089 ILHCANFNV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A68:02/HLA-A69:01/HLA-A*31:01 I
orf1b 28050 IPRRNVATL HLA-B07:02/HLA-A02:01/HLA-B*35:01 I
orf1b 28464 ISDYDYYRY HLA-A01:01/HLA-A29:02/HLA-A*30:02 I
orf1b 29237 IVDTVSALV HLA-A02:02/HLA-A02:06/HLA-A02:01/HLA-A68:02/HLA-A*02:03 I
orf1b 31833 KLFAAETLK HLA-A03:01/HLA-A11:01/HLA-A31:01/HLA-A68:01 I
orf1b 32060 KLNVGDYFV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 32183 KLSYGIATV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 32390 KMQRMLLEK HLA-A03:01/HLA-A11:01/HLA-A31:01/HLA-A68:01 I
orf1b 32976 KQFDTYNLW HLA-A24:02/HLA-B15:01/HLA-B58:01/HLA-A31:01 I
orf1b 37144 LLDDFVEII HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03 I
orf1b 37468 LLLDDFVEI HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03 I
orf1b 37583 LLMPILTLT HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 38043 LMIERFVSL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 38874 LQLGFSTGV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 40459 LVLSVNPYV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03/HLA-A*68:02 I
orf1b 42093 MLWCKDGHV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 42128 MMISAGFSL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 42972 MVMCGGSLYV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 44927 NLWNTFTRL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 45000 NMLRIMASL HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A02:01/HLA-A*68:02 I
orf1b 5209 ATVVIGTSK HLA-A11:01/HLA-A03:01/HLA-A68:01/HLA-A31:01 I
orf1b 54183 RILGAGCFV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03 I
orf1b 54847 RLYYDSMSY HLA-B15:01/HLA-A03:01/HLA-A*11:01 I
orf1b 55444 RQLLFVVEV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 61254 SSNVANYQK HLA-A11:01/HLA-A03:01/HLA-A68:01/HLA-A31:01 I
orf1b 64850 TLIGDCATV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 65132 TLVPQEHYV HLA-A02:01/HLA-A69:01 I
orf1b 65176 TMADLVYAL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 66710 TTLPVNVAF HLA-B58:01/HLA-A69:01/HLA-A02:01/HLA-B15:01 I
orf1b 69716 VLQAVGACV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 69850 VLWAHGFEL HLA-A02:01/HLA-A24:02/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A31:01/HLA-A69:01/HLA-A01:01/HLA-A03:01/HLA-A68:02/HLA-B08:01/HLA-B15:01/HLA-B*58:01 I
orf1b 69929 VMCGGSLYV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 71635 VVDKYFDCY HLA-A01:01/HLA-A29:02/HLA-A*30:02 I
orf1b 71917 VVYRGTTTY HLA-B15:01/HLA-A03:01/HLA-A11:01/HLA-B35:01/HLA-B*58:01 I
orf1b 74593 YLDAYNMMI HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06 I
orf1b 74850 YLNTLTLAV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 75508 YQKVGMQKY HLA-B15:01/HLA-B27:05 I
orf1b 76120 YTMADLVYA HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
orf1b 76266 YVFCTVNAL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
ORF6 24313 HLVDFQVTI HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
ORF7a 24466 HPLADNKFAL HLA-B07:02/HLA-B35:01/HLA-B51:01/HLA-B53:01 I
ORF7a 31846 KLFIRQEEV HLA-A02:01/HLA-A31:01/HLA-B*08:01 I
ORF7a 50560 QECVRGTTVLLKEPC HLA-DRB1*01:01 II
ORF7a 6184 CELYHYQECV HLA-B45:01/HLA-B40:01/HLA-B*44:03 I
ORF7a 62331 SVSPKLFIR HLA-A31:01/HLA-A11:01/HLA-A*68:01 I
ORF7a 73668 YEGNSPFHPL HLA-B40:01/HLA-B40:02 I
ORF7b 1349 AFLLFLVLI HLA-A26:01/HLA-A01:01/HLA-A23:01/HLA-A29:02 I
ORF7b 1350 AFLLFLVLIMLIIFW HLA-DRB1*01:01 II
ORF7b 16498 FLAFLLFLV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03/HLA-A*68:02 I
ORF7b 16499 FLAFLLFLVL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
ORF7b 16500 FLAFLLFLVLIMLII HLA-DRB1*01:01 II
ORF7b 16716 FLLFLVLIM HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A68:02 I
ORF7b 16717 FLLFLVLIML HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06 I
ORF7b 16718 FLLFLVLIMLIIFWF HLA-DRB1*01:01 II
ORF7b 16953 FLVLIMLII HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A68:02 I
ORF7b 16954 FLVLIMLIIFWFSLE HLA-DRB1*01:01 II
ORF7b 18422 FYLCFLAFL HLA-A23:01/HLA-A24:02 I
ORF7b 18423 FYLCFLAFLL HLA-A23:01/HLA-A24:02/HLA-A*29:02 I
ORF7b 25571 IDFYLCFLAF HLA-B44:02/HLA-B44:03/HLA-B45:01/HLA-B18:01/HLA-B*40:01 I
ORF7b 27516 IMLIIFWFSL HLA-A02:01/HLA-A02:02 I
ORF7b 34763 LAFLLFLVLIMLIIF HLA-DRB1*01:01 II
ORF7b 35912 LFLVLIMLIIFWFSL HLA-DRB1*01:01 II
ORF7b 36477 LIDFYLCFL HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03/HLA-A*68:02 I
ORF7b 37279 LLFLVLIML HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
ORF7b 37280 LLFLVLIMLI HLA-A02:02/HLA-A02:01/HLA-A*02:03 I
ORF7b 37281 LLFLVLIMLIIFWFS HLA-DRB1*01:01 II
ORF7b 41962 MLIIFWFSL HLA-A02:02/HLA-A02:06/HLA-A*02:01 I
ORF7b 74577 YLCFLAFLL HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
ORF7b 74578 YLCFLAFLLFLVLIM HLA-DRB1*01:01 II
S 10112 DSFKEELDKY HLA-A26:01/HLA-A29:02/HLA-A30:02/HLA-A01:01 I
S 1220 AEVQIDRLI HLA-B40:02/HLA-B44:02/HLA-B44:03/HLA-B45:01 I
S 1221 AEVQIDRLIT HLA-B40:02/HLA-B44:03/HLA-B45:01/HLA-B40:01/HLA-B*44:02 I
S 16156 FIAGLIAIV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02/HLA-A2 I
S 17341 FPNITNLCPF HLA-B35:01/HLA-B51:01/HLA-B53:01/HLA-B07:02/HLA-B*54:01 I
S 18514 GAALQIPFAMQMAYR HLA-DRB1*01:01 II
S 20907 GLIAIVMVTI HLA-A02:02/HLA-A02:03/HLA-A02:01/HLA-A02:06/HLA-A*68:02 I
S 22144 GRLQSLQTY HLA-B*27:05 I
S 22322 GSFCTQLNR HLA-A11:01/HLA-A31:01/HLA-A68:01/HLA-A03:01 I
S 23200 GVVFLHVTY HLA-A*11:01 I
S 23293 GWTFGAGAALQIPFA HLA-DRB1*01:01 II
S 23436 GYQPYRVVVL HLA-A23:01/HLA-A24:02/HLA-A*29:02 I
S 25662 IDRLITGRLQSLQTY HLA-DRB1*01:01 II
S 26198 IGAGICASY HLA-A29:02/HLA-A30:02 I
S 26710 IITTDNTFV HLA-A*02:01 I
S 2801 ALNTLVKQL HLA-A*02:01 I
S 28511 ISGINASVVNIQKEI HLA-DRB1*01:01 II
S 35205 LDKYFKNHTSPDVDL HLA-DRB1*01:01 II
S 3589 APHGVVFLHV HLA-B07:02/HLA-B54:01/HLA-B35:01/HLA-B53:01 I
S 36075 LGDISGINASVVNIQ HLA-DRB1*01:01 II
S 36103 LGFIAGLIAIVMVTI HLA-DRB1*01:01 II
S 36481 LIDLQELGKY HLA-A30:02/HLA-A01:01/HLA-A26:01/HLA-A29:02 I
S 36724 LITGRLQSL HLA-A2/HLA-A*02:01 I
S 37544 LLLQYGSFC HLA-A*02:01 I
S 37724 LLQYGSFCT HLA-A*02:01 I
S 38353 LNTLVKQLSSNFGAI HLA-DRB1*01:01 II
S 38831 LQDVVNQNAQALNTL HLA-DRB1*01:01 II
S 38855 LQIPFAMQM HLA-B15:01/HLA-C15:02/HLA-B40:01/HLA-B58:01 I
S 38990 LQSLQTYVTQQLIRA HLA-DRB1*01:01 II
S 39003 LQTYVTQQLIRAAEI HLA-DRB1*01:01 II
S 3939 AQALNTLVK HLA-A11:01/HLA-A03:01/HLA-A31:01/HLA-A68:01 I
S 3982 AQKFNGLTVLPPLLT HLA-DRB1*01:01 II
S 42873 MTSCCSCLK HLA-A11:01/HLA-A31:01/HLA-A33:01/HLA-A68:01/HLA-A*03:01 I
S 4321 ASANLAATK HLA-A11:01/HLA-A03:01/HLA-A68:01/HLA-A31:01 I
S 44814 NLNESLIDL HLA-A*02:01 I
S 47041 PCSFGGVSVITPGTN HLA-DRB1*01:01 II
S 50166 PYRVVVLSF HLA-A23:01/HLA-A24:02/HLA-A01:01/HLA-A26:01 I
S 50641 QELGKYEQYI HLA-B44:02/HLA-B44:03/HLA-B*40:02 I
S 51112 QIPFAMQMAYRFNGI HLA-DRB1*01:01 II
S 51999 QPYRVVVLSF HLA-B07:02/HLA-B53:01 I
S 52057 QQLIRAAEIRASANL HLA-DRB1*01:01 II
S 52672 QTYVTQQLIRAAEIR HLA-DRB1*01:01 II
S 54507 RLDKVEAEV HLA-A02:01/HLA-A02:02/HLA-A02:06/HLA-A02:03/HLA-A*68:02 I
S 54680 RLNEVAKNL HLA-A*02:01 I
S 54725 RLQSLQTYV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
S 56252 RVDFCGKGY HLA-A30:02/HLA-A01:01/HLA-A03:01/HLA-B15:01/HLA-B*27:05 I
S 5908 AYRFNGIGVTQNVLY HLA-DRB1*01:01 II
S 59161 SLIDLQELGK HLA-A03:01/HLA-A11:01/HLA-A31:01/HLA-A68:01/HLA-A*33:01 I
S 61229 SSNFGAISSVLNDIL HLA-DRB1*01:01 II
S 62221 SVLNDILSR HLA-A11:01/HLA-A31:01/HLA-A*68:01 I
S 63951 TGRLQSLQTYVTQQL HLA-DRB1*01:01 II
S 65906 TQNVLYENQK HLA-A11:01/HLA-A68:01 I
S 6668 CMTSCCSCLK HLA-A68:01/HLA-A03:01/HLA-A11:01/HLA-A31:01/HLA-A*33:01 I
S 69657 VLNDILSRL HLA-A*02:01 I
S 70575 VQIDRLITGR HLA-A31:01/HLA-A03:01/HLA-A11:01/HLA-A33:01/HLA-A*68:01 I
S 70718 VRFPNITNL HLA-C14:02/HLA-B27:05 I
S 71663 VVFLHVTYV HLA-A02:01/HLA-A02:02/HLA-A02:03/HLA-A02:06/HLA-A*68:02 I
S 72717 WLGFIAGLIAIVMVT HLA-DRB1*01:01 II
S 7289 CVNFNFNGLTGTGVL HLA-DRB1*01:01 II
S 73751 YEQYIKWPWY HLA-B44:02/HLA-B18:01/HLA-B44:03/HLA-B40:01/HLA-B*45:01 I
S 9006 DKYFKNHTSPDVDLG HLA-DRB1*01:01 II
S 999 AEIRASANLA HLA-B45:01/HLA-B40:01/HLA-B44:02/HLA-B44:03/HLA-B*40:02 I
S 100048 GAALQIPFAMQMAYRF HLA-DRA01:01 DRB107:01 II
S 100300 MAYRFNGIGVTQNVLY HLA-DRB1*04:01 II
S 100428 QLIRAAEIRASANLAATK HLA-DRB1*04:01 II
S 50311 QALNTLVKQLSSNFGAI HLA-DRB1*04:01 II
Table 7.7: Set of SARS-CoV-derived S and N protein T cell epitopes (obtained using positive MHC binding assays) that are identical in SARS-CoV-2 and that maximize estimated population coverage in China (86 distinct epitopes).
Epitopes MHC Allele Class MHC Allele Accumulated Population Coverage in China (%)
GSFCTQLNR, GVVFLHVTY, AQALNTLVK, MTSCCSCLK,  ASANLAATK, SLIDLQELGK, SVLNDILSR, TQNVLYENQK,  CMTSCCSCLK, VQIDRLITGR, KTFPPTEPK, KTFPPTEPKK,  LSPRWYFYY, ASAFFGMSR, ATEGALNTPK, QLPQGTTLPK,  QQQGQTVTK, QQQQGQTVTK, SASAFFGMSR,  SQASSRSSSR, TPSGTWLTY I HLA-A*11:01 43.5
GYQPYRVVVL, PYRVVVLSF, LSPRWYFYY I HLA-A*24:02 60.7
FIAGLIAIV, GLIAIVMVTI, IITTDNTFV, ALNTLVKQL, LITGRLQSL,  LLLQYGSFC, LLQYGSFCT, NLNESLIDL, RLDKVEAEV,  RLNEVAKNL, RLQSLQTYV, VLNDILSRL, VVFLHVTYV, ILLNKHID,  FPRGQGVPI, LLLLDRLNQ, GMSRIGMEV, ILLNKHIDA,  ALNTPKDHI, LALLLLDRL, LLLDRLNQL, LLLLDRLNQL,  LQLPQGTTL, AQFAPSASA, TTLPKGFYA, VLQLPQGTTL I HLA-A*02:01 69.6
FIAGLIAIV, GLIAIVMVTI, IITTDNTFV, ALNTLVKQL, LITGRLQSL,  LLLQYGSFC, LLQYGSFCT, NLNESLIDL, RLDKVEAEV,  RLNEVAKNL, RLQSLQTYV, VLNDILSRL, VVFLHVTYV, ILLNKHID,  FPRGQGVPI, LLLLDRLNQ, GMSRIGMEV, ILLNKHIDA, ALNTPKDHI,  LALLLLDRL, LLLDRLNQL, LLLLDRLNQL, LQLPQGTTL,  AQFAPSASA, TTLPKGFYA, VLQLPQGTTL I HLA-A*02:03 75.2
LQIPFAMQM, RVDFCGKGY I HLA-B*15:01 78.7
AEVQIDRLIT, LQIPFAMQM, YEQYIKWPWY, AEIRASANLA,  MEVTPSGTWL, GMEVTPSGTWL I HLA-B*40:01 81.4
FIAGLIAIV, GLIAIVMVTI, IITTDNTFV, ALNTLVKQL, LITGRLQSL,  LLLQYGSFC, LLQYGSFCT, NLNESLIDL, RLDKVEAEV,  RLNEVAKNL, RLQSLQTYV, VLNDILSRL, VVFLHVTYV, ILLNKHID,  FPRGQGVPI, LLLLDRLNQ, GMSRIGMEV, ILLNKHIDA, ALNTPKDHI,  LALLLLDRL, LLLDRLNQL, LLLLDRLNQL, LQLPQGTTL,  AQFAPSASA, TTLPKGFYA, VLQLPQGTTL I HLA-A*02:06 83.7
GSFCTQLNR, GVVFLHVTY, AQALNTLVK, MTSCCSCLK,  ASANLAATK, SLIDLQELGK, SVLNDILSR, TQNVLYENQK,  CMTSCCSCLK, VQIDRLITGR, KTFPPTEPK, KTFPPTEPKK,  LSPRWYFYY, ASAFFGMSR, ATEGALNTPK, QLPQGTTLPK,  QQQGQTVTK, QQQGQTVTKK, QQQQGQTVTK,  SASAFFGMSR, SQASSRSSSR, TPSGTWLTY I HLA-A*31:01 85.1
MTSCCSCLK, SLIDLQELGK, CMTSCCSCLK, VQIDRLITGR,  SASAFFGMSR, SQASSRSSSR I HLA-A*33:01 86.4
FPNITNLCPF, APHGVVFLHV, FPRGQGVPI, APSASAFFGM I HLA-B*51:01 87.5
LQIPFAMQM, RVDFCGKGY I HLA-B*58:01 88.5
GSFCTQLNR, GVVFLHVTY, AQALNTLVK, MTSCCSCLK,  ASANLAATK, SLIDLQELGK, SVLNDILSR, TQNVLYENQK,  CMTSCCSCLK, VQIDRLITGR, KTFPPTEPK, KTFPPTEPKK,  LSPRWYFYY, ASAFFGMSR, ATEGALNTPK, QLPQGTTLPK,  QQQGQTVTK, QQQGQTVTKK, QQQQGQTVTK,  SASAFFGMSR, SQASSRSSSR, TPSGTWLTY I HLA-A*03:01 89.4
VRFPNITNL I HLA-C*14:02 90.2
LQIPFAMQM, RVDFCGKGY I HLA-C*15:02 90.7
FPNITNLCPF, APHGVVFLHV, FPRGQGVPI, APSASAFFGM I HLA-B*35:01 91.2
FPNITNLCPF, APHGVVFLHV, FPRGQGVPI, APSASAFFGM I HLA-B*54:01 91.5
GSFCTQLNR, GVVFLHVTY, AQALNTLVK, MTSCCSCLK,  ASANLAATK, SLIDLQELGK, SVLNDILSR, TQNVLYENQK,  CMTSCCSCLK, VQIDRLITGR, KTFPPTEPK, KTFPPTEPKK,  LSPRWYFYY, ASAFFGMSR, ATEGALNTPK, QLPQGTTLPK,  QQQGQTVTK, QQQGQTVTKK, QQQQGQTVTK, SASAFFGMSR,  SQASSRSSSR, TPSGTWLTY I HLA-A*68:01 91.8
FPNITNLCPF, APHGVVFLHV, FPRGQGVPI, APSASAFFGM I HLA-B*07:02 92.2
GYQPYRVVVL, PYRVVVLSF, LSPRWYFYY I HLA-A*23:01 92.4
GAALQIPFAMQMAYR, GWTFGAGAALQIPFA, IDRLITGRLQSLQTY,  ISGINASVVNIQKEI, LDKYFKNHTSPDVDL, LGDISGINASVVNIQ,  LGFIAGLIAIVMVTI, LNTLVKQLSSNFGAI, LQDVVNQNAQALNTL,  LQSLQTYVTQQLIRA, LQTYVTQQLIRAAEI, AQKFNGLTVLPPLLT,  PCSFGGVSVITPGTN, QIPFAMQMAYRFNGI, QQLIRAAEIRASANL,  QTYVTQQLIRAAEIR, AYRFNGIGVTQNVLY, SSNFGAISSVLNDIL,  TGRLQSLQTYVTQQL, WLGFIAGLIAIVMVT, CVNFNFNGLTGTGVL,  DKYFKNHTSPDVDLG, GQTVTKKSAAEASKK, IDAYKTFPPTEPKKD,  MSRIGMEVTPSGTWL, NKHIDAYKTFPPTEP, VLQLPQGTTLPKGFY II HLA-DRB1*01:01 92.6
YEQYIKWPWY I HLA-B*18:01 92.7
FPRGQGVPI I HLA-B*08:01 92.8
Table 7.8: Estimated global and Chinese population coverages for the individual SARS-CoV-derived S or N protein T cell epitopes (obtained using positive MHC binding assays), that are identical in SARS-CoV-2.
Protein IEDB Epitope MHC Allele Global Population Coverage (%) Population Coverage in China (%)
N 17385 FPRGQGVPI HLA-B07:02,HLA-B54:01,HLA-B08:01,HLA-B35:01,HLA-B51:01,HLA-A02:01,HLA-B*53:01 62.9 30.0
N 39576 LSPRWYFYY HLA-A01:01,HLA-A29:02,HLA-A30:02,HLA-A11:01,HLA-A23:01,HLA-A24:02,HLA-A*31:01 60.5 66.7
S 50166 PYRVVVLSF HLA-A23:01,HLA-A24:02,HLA-A01:01,HLA-A26:01 45.4 31.3
S 16156 FIAGLIAIV HLA-A02:01,HLA-A02:02,HLA-A02:03,HLA-A02:06,HLA-A*68:02,HLA-A2 43.7 30.1
S 20907 GLIAIVMVTI HLA-A02:02,HLA-A02:03,HLA-A02:01,HLA-A02:06,HLA-A*68:02 43.7 30.1
S 54507 RLDKVEAEV HLA-A02:01,HLA-A02:02,HLA-A02:06,HLA-A02:03,HLA-A*68:02 43.7 30.1
S 54725 RLQSLQTYV HLA-A02:01,HLA-A02:02,HLA-A02:03,HLA-A02:06,HLA-A*68:02 43.7 30.1
S 71663 VVFLHVTYV HLA-A02:01,HLA-A02:02,HLA-A02:03,HLA-A02:06,HLA-A*68:02 43.7 30.1
S 56252 RVDFCGKGY HLA-A30:02,HLA-A01:01,HLA-A03:01,HLA-B15:01,HLA-B*27:05 43.1 21.0
N 3956 AQFAPSASA HLA-A02:02,HLA-A02:06,HLA-A02:01,HLA-A02:03 41.8 29.9
S 42873 MTSCCSCLK HLA-A11:01,HLA-A31:01,HLA-A33:01,HLA-A68:01,HLA-A*03:01 41.4 52.9
S 59161 SLIDLQELGK HLA-A03:01,HLA-A11:01,HLA-A31:01,HLA-A68:01,HLA-A*33:01 41.4 52.9
S 6668 CMTSCCSCLK HLA-A68:01,HLA-A03:01,HLA-A11:01,HLA-A31:01,HLA-A*33:01 41.4 52.9
S 70575 VQIDRLITGR HLA-A31:01,HLA-A03:01,HLA-A11:01,HLA-A33:01,HLA-A*68:01 41.4 52.9
N 56979 SASAFFGMSR HLA-A11:01,HLA-A31:01,HLA-A68:01,HLA-A33:01,HLA-A*03:01 41.4 52.9
S 22322 GSFCTQLNR HLA-A11:01,HLA-A31:01,HLA-A68:01,HLA-A03:01 40.0 50.1
S 3939 AQALNTLVK HLA-A11:01,HLA-A03:01,HLA-A31:01,HLA-A68:01 40.0 50.1
S 4321 ASANLAATK HLA-A11:01,HLA-A03:01,HLA-A68:01,HLA-A31:01 40.0 50.1
N 33667 KTFPPTEPK HLA-A11:01,HLA-A03:01,HLA-A31:01,HLA-A68:01 40.0 50.1
N 33668 KTFPPTEPKK HLA-A03:01,HLA-A11:01,HLA-A68:01,HLA-A31:01 40.0 50.1
N 4307 ASAFFGMSR HLA-A31:01,HLA-A11:01,HLA-A68:01,HLA-A03:01 40.0 50.1
N 4936 ATEGALNTPK HLA-A11:01,HLA-A03:01,HLA-A68:01,HLA-A31:01 40.0 50.1
S 26710 IITTDNTFV HLA-A*02:01 39.1 14.6
S 2801 ALNTLVKQL HLA-A*02:01 39.1 14.6
S 36724 LITGRLQSL HLA-A2,HLA-A*02:01 39.1 14.6
S 37544 LLLQYGSFC HLA-A*02:01 39.1 14.6
S 37724 LLQYGSFCT HLA-A*02:01 39.1 14.6
S 44814 NLNESLIDL HLA-A*02:01 39.1 14.6
S 54680 RLNEVAKNL HLA-A*02:01 39.1 14.6
S 69657 VLNDILSRL HLA-A*02:01 39.1 14.6
N 125100 ILLNKHID HLA-A*02:01 39.1 14.6
N 193498 LLLLDRLNQ HLA-A*02:01 39.1 14.6
N 21347 GMSRIGMEV HLA-A*02:01 39.1 14.6
N 27182 ILLNKHIDA HLA-A*02:01 39.1 14.6
N 2802 ALNTPKDHI HLA-A*02:01 39.1 14.6
N 34851 LALLLLDRL HLA-A*02:01 39.1 14.6
N 37473 LLLDRLNQL HLA-A*02:01 39.1 14.6
N 37515 LLLLDRLNQL HLA-A*02:01 39.1 14.6
N 38881 LQLPQGTTL HLA-A*02:01 39.1 14.6
N 66706 TTLPKGFYA HLA-A*02:01 39.1 14.6
N 69720 VLQLPQGTTL HLA-A*02:01 39.1 14.6
N 51482 QLPQGTTLPK HLA-A03:01,HLA-A11:01,HLA-A*68:01 35.8 47.1
S 17341 FPNITNLCPF HLA-B35:01,HLA-B51:01,HLA-B53:01,HLA-B07:02,HLA-B*54:01 30.3 17.2
S 23436 GYQPYRVVVL HLA-A23:01,HLA-A24:02,HLA-A*29:02 29.5 24.8
N 3810 APSASAFFGM HLA-B07:02,HLA-B35:01,HLA-B51:01,HLA-B53:01 29.4 14.4
S 73751 YEQYIKWPWY HLA-B44:02,HLA-B18:01,HLA-B44:03,HLA-B40:01,HLA-B*45:01 28.4 16.3
S 10112 DSFKEELDKY HLA-A26:01,HLA-A29:02,HLA-A30:02,HLA-A01:01 28.1 8.7
S 36481 LIDLQELGKY HLA-A30:02,HLA-A01:01,HLA-A26:01,HLA-A29:02 28.1 8.7
N 71461 VTPSGTWLTY HLA-A30:02,HLA-A01:01,HLA-A26:01,HLA-A29:02 28.1 8.7
N 60380 SQASSRSSSR HLA-A31:01,HLA-A68:01,HLA-A11:01,HLA-A33:01 27.2 50.6
S 62221 SVLNDILSR HLA-A11:01,HLA-A31:01,HLA-A*68:01 25.6 47.8
S 1221 AEVQIDRLIT HLA-B40:02,HLA-B44:03,HLA-B45:01,HLA-B40:01,HLA-B*44:02 25.1 18.1
S 999 AEIRASANLA HLA-B45:01,HLA-B40:01,HLA-B44:02,HLA-B44:03,HLA-B*40:02 25.1 18.1
S 3589 APHGVVFLHV HLA-B07:02,HLA-B54:01,HLA-B35:01,HLA-B53:01 23.9 10.2
N 60242 SPRWYFYYL HLA-B07:02,HLA-B51:01,HLA-B53:01,HLA-B54:01 23.0 13.8
S 38855 LQIPFAMQM HLA-B15:01,HLA-C15:02,HLA-B40:01,HLA-B58:01 22.6 34.7
S 65906 TQNVLYENQK HLA-A11:01,HLA-A68:01 20.9 44.7
N 52114 QQQGQTVTK HLA-A11:01,HLA-A31:01 20.4 46.6
N 65763 TPSGTWLTY HLA-A29:02,HLA-A11:01 19.1 43.8
S 100048 GAALQIPFAMQMAYRF HLA-DRA01:01, DRB107:01 18.2 8.3
S 1220 AEVQIDRLI HLA-B40:02,HLA-B44:02,HLA-B44:03,HLA-B45:01 18.0 6.7
S 50641 QELGKYEQYI HLA-B44:02,HLA-B44:03,HLA-B*40:02 16.8 6.3
N 2431 ALALLLLDR HLA-A*03:01 16.8 3.3
S 23200 GVVFLHVTY HLA-A*11:01 15.5 43.5
N 52129 QQQQGQTVTK HLA-A*11:01 15.5 43.5
S 51999 QPYRVVVLSF HLA-B07:02,HLA-B53:01 15.1 3.6
N 22856 GTTLPKGFY HLA-A30:02,HLA-A29:02,HLA-A*26:01 11.9 5.1
S 18514 GAALQIPFAMQMAYR HLA-DRB1*01:01 11.5 2.8
S 23293 GWTFGAGAALQIPFA HLA-DRB1*01:01 11.5 2.8
S 25662 IDRLITGRLQSLQTY HLA-DRB1*01:01 11.5 2.8
S 28511 ISGINASVVNIQKEI HLA-DRB1*01:01 11.5 2.8
S 35205 LDKYFKNHTSPDVDL HLA-DRB1*01:01 11.5 2.8
S 36075 LGDISGINASVVNIQ HLA-DRB1*01:01 11.5 2.8
S 36103 LGFIAGLIAIVMVTI HLA-DRB1*01:01 11.5 2.8
S 38353 LNTLVKQLSSNFGAI HLA-DRB1*01:01 11.5 2.8
S 38831 LQDVVNQNAQALNTL HLA-DRB1*01:01 11.5 2.8
S 38990 LQSLQTYVTQQLIRA HLA-DRB1*01:01 11.5 2.8
S 39003 LQTYVTQQLIRAAEI HLA-DRB1*01:01 11.5 2.8
S 3982 AQKFNGLTVLPPLLT HLA-DRB1*01:01 11.5 2.8
S 47041 PCSFGGVSVITPGTN HLA-DRB1*01:01 11.5 2.8
S 51112 QIPFAMQMAYRFNGI HLA-DRB1*01:01 11.5 2.8
S 52057 QQLIRAAEIRASANL HLA-DRB1*01:01 11.5 2.8
S 52672 QTYVTQQLIRAAEIR HLA-DRB1*01:01 11.5 2.8
S 5908 AYRFNGIGVTQNVLY HLA-DRB1*01:01 11.5 2.8
S 61229 SSNFGAISSVLNDIL HLA-DRB1*01:01 11.5 2.8
S 63951 TGRLQSLQTYVTQQL HLA-DRB1*01:01 11.5 2.8
S 72717 WLGFIAGLIAIVMVT HLA-DRB1*01:01 11.5 2.8
S 7289 CVNFNFNGLTGTGVL HLA-DRB1*01:01 11.5 2.8
S 9006 DKYFKNHTSPDVDLG HLA-DRB1*01:01 11.5 2.8
N 25542 IDAYKTFPPTEPKKD HLA-DRB1*01:01 11.5 2.8
N 42648 MSRIGMEVTPSGTWL HLA-DRB1*01:01 11.5 2.8
N 44501 NKHIDAYKTFPPTEP HLA-DRB1*01:01 11.5 2.8
N 69721 VLQLPQGTTLPKGFY HLA-DRB1*01:01 11.5 2.8
S 100300 MAYRFNGIGVTQNVLY HLA-DRB1*04:01 11.2 1.9
S 100428 QLIRAAEIRASANLAATK HLA-DRB1*04:01 11.2 1.9
S 50311 QALNTLVKQLSSNFGAI HLA-DRB1*04:01 11.2 1.9
N 190494 MEVTPSGTWL HLA-B*40:01 7.8 11.9
N 193464 GMEVTPSGTWL HLA-B*40:01 7.8 11.9
S 70718 VRFPNITNL HLA-C14:02,HLA-B27:05 7.7 7.5
S 26198 IGAGICASY HLA-A29:02,HLA-A30:02 6.3 0.8
S 22144 GRLQSLQTY HLA-B*27:05 4.8 0.6
N 956 AEGSRGGSQA HLA-B*45:01 1.3 0.4